wurmlab/sequenceserver

bed or gff alternate table format outputs

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#501 opened on Nov 19, 2020

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good first issue

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Description

We should enable a slightly-modified table output format that is gff or bed-like and can thus be more easily read into IGV

Contributor guide

Research direction
Investigate the current table output generation in the codebase, understand BLAST result parsing, and then implement a new serializer for BED or GFF format.
Tech stack
javascript
Domain
backenddata visualization
Issue type
Feature
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
2
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
1-3 hours
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Active
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Mostly clear
Prerequisites
Git
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
70