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slowkow/MUDANR

Multi-sample Unified Discriminant ANalysis

Last commit Feb 25, 2018

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slowkow/MultiQCPython

Aggregate results from bioinformatics analyses across many samples into a single report.

Last commit May 8, 2016

 (0 stars) (1 fork) (0 indexed issues) (0 open good first issues)
slowkow/MWNNPython

Multi-modal Weighted Nearest Neighbors

Last commit Nov 20, 2020

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/ncvregR

Regularization paths for SCAD- and MCP-penalized regression models

Last commit Apr 26, 2017

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slowkow/numbatR

Haplotype-aware CNV analysis from single-cell RNA-seq

Last commit Oct 22, 2025

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/pagoda2JavaScript

Last commit May 31, 2017

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slowkow/pegasusPython

Last commit Dec 3, 2020

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/pegasusioPython

pegasus io module for reading/writing single-cell genomics data

Last commit Jun 25, 2020

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slowkow/phylobuildC++

Fast neighbor-joining algorithms for phylogenetic tree construction in R

Last commit Jan 27, 2026

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slowkow/picardmetricsShell

:vertical_traffic_light: Run Picard on BAM files and collate 90 metrics into one file.

Last commit Sep 27, 2017

 (40 stars) (7 forks) (0 indexed issues) (0 open good first issues)
slowkow/prestoR

Fast Wilcoxon and auROC

Last commit Feb 24, 2020

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/proprHTML

An R package to calculate proportionality between vectors of compositional data

Last commit Nov 28, 2017

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/proxysnpsR

:bookmark: Get SNP proxies from the 1000 Genomes Project.

Last commit May 16, 2018

 (31 stars) (9 forks) (0 indexed issues) (0 open good first issues)
slowkow/pubmed-pairsJavaScript

✌️ Search PubMed for each pair of terms from two lists.

Last commit Nov 16, 2023

 (4 stars) (1 fork) (0 indexed issues) (0 open good first issues)
slowkow/pycliPython

:computer: Basic structure for a simple Python CLI

Last commit Oct 22, 2016

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slowkow/pytabixC

:card_index: Retrieve data in genomic intervals with a Python interface for tabix.

Last commit Aug 10, 2015

 (82 stars) (10 forks) (0 indexed issues) (0 open good first issues)
slowkow/quarto-webJavaScript

Quarto website

Last commit Jul 16, 2025

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slowkow/QuaternaryProdC++

An R package for computing the Quaternary Dot Product Scoring Statistic for signed and unsigned causal graphs.

Last commit Feb 2, 2019

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slowkow/rapids-single-cell-examplesJupyter Notebook

Examples of single-cell genomic analysis accelerated with RAPIDS

Last commit Sep 28, 2020

 (0 stars) (1 fork) (0 indexed issues) (0 open good first issues)
slowkow/rcpp-galleryC++

Source code for the Rcpp Gallery website

Last commit May 4, 2018

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