nf-core/sarek

Tutorial: CNV calling

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#1,713 opened on Oct 30, 2024

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enhancementhelp wanted

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Description

Topic

CNVs analysis using Sarek

Tasks to realise the tutorial

  1. identify appropriate software
  2. simulate CNV data (max size 100Mb each)
  3. prepare gitpod / codespaces environment and build code
  4. prepare theoretical intro
  5. write down hands-on tutorial

Contributor guide

Research direction
Follow the tasks list: identify appropriate software for CNV calling, simulate CNV data (max 100Mb each), prepare Gitpod/Codespaces environment and build code, prepare theoretical introduction, and write a hands on tutorial.
Tech stack
None
Domain
data
Issue type
Documentation
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
1
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
Half day
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Fresh
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Clear
Prerequisites
Git
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
90