nf-core/genomeqc

GFFREAD fails

Closed

#61 opened on Oct 28, 2024

View on GitHubContributor guide
 (7 comments) (0 reactions) (1 assignee)Nextflow (24 forks)auto 404
buggood first issue

Repository metrics

Stars
 (24 stars)
PR merge metrics
 (PR metrics pending)

Description

The pipeline didn't work downloading the arbidopsis thaliana reference genome from ncbi (GCF_000001735.4).

Contributor guide

Research direction
Check the NCBI download URL for GCF 000001735.4, verify the pipeline configuration for genome download, and inspect any error logs.
Tech stack
None
Domain
backend
Issue type
Bug
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
2
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
1-3 hours
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Active
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Mostly clear
Prerequisites
GitNextflow
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
60