nf-core/deepvariant

Deepvariant Version

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#19 opened on Feb 17, 2019

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 (17 comments) (0 reactions) (0 assignees)Nextflow (26 forks)auto 404
feature-requestgood first issue

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Description

@ewels Hello,

  1. Could you update the pipeline to 0.72 version?

  2. If i run it locally on my pc, will it use my acceleration cores of my GPU?

Contributor guide

Research direction
Investigate where the DeepVariant version is defined in the Nextflow pipeline and how to update it. Consider the GPU usage question by checking the DeepVariant container and the pipeline configuration for GPU support.
Tech stack
pythontensorflowdocker
Domain
datamachine learning
Issue type
Feature
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
2
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
1-3 hours
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Active
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Mostly clear
Prerequisites
GitNextflowDocker
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
75