biocore/q2-qemistree

use biom for _match.py

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#55 opened on Mar 26, 2019

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enhancementgood first issue

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Description

This is to avoid using to_dataframe() which can get expensive for large tables

Contributor guide

Research direction
Examine match.py to identify where to dataframe() is used and replace with biom equivalent functions.
Tech stack
python
Domain
data
Issue type
Refactor
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
2
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
1-3 hours
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Fresh
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Clear
Prerequisites
PythonGit
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
75